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1

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing

Mailhe, Morgane, Ricaboni, Davide, Vitton, Véronique, Gonzalez, Jean-Michel, Bachar, Dipankar, Dubourg, Grégory, Cadoret, Frédéric, Robert, Catherine, Delerce, Jérémy, Levasseur, Anthony, Fournier, Pi

Journal:

BMC Microbiology

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

2

Characterization of microbial communities in the aqueous phase of a constructed model wetland treating 1,2-dichloroethene-contaminated groundwater

Gwenaël Imfeld, Cristian Estop Aragonés, Ingo Fetzer, Éva Mészáros, Simone Zeiger, Ivonne Nijenhuis, Marcell Nikolausz, Sylvain Delerce, Hans H. Richnow

Journal:

FEMS Microbiology Ecology

Year:

2010

Language:

english

File:

PDF, 1.63 MB

english, 2010

3

‘Urmitella timonensis’ gen. nov., sp. nov., ‘Blautia marasmi’ sp. nov., ‘Lachnoclostridium pacaense’ sp. nov., ‘Bacillus marasmi’ sp. nov. and ‘Anaerotruncus rubiinfantis’ sp. nov., isolated from stool samples of undernourished African children

Pham, T.-P.-T., Cadoret, F., Alou, M.Tidjani, Brah, S., Diallo, B.Ali, Diallo, A., Sokhna, C., Delerce, J., Fournier, P.-E., Million, M., Raoult, D.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 1.24 MB

english, 2017

4

Noncontiguous finished genome sequences and description of Bacillus massiliglaciei, Bacillus mediterraneensis, Bacillus massilinigeriensis, Bacillus phocaeensis and Bacillus tuaregi, five new species identified by culturomics

Cadoret, F., Alou, M.T., Afouda, P., Traore, I.S., Bréchard, L., Michelle, C., Di Pinto, F., Andrieu, C., Delerce, J., Levasseur, A., Fournier, P.-E., Raoult, D.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

5

Microbial culturomics to isolate halophilic bacteria from table salt: Genome sequence and description of the moderately halophilic bacterium Bacillus salis sp. nov.

Seck, El hadji, Diop, Awa, Armstrong, Nicholas, Delerce, Jérémy, Fournier, Pierre-Edouard, Raoult, Didier, Khelaifia, Saber

Journal:

New Microbes and New Infections

Year:

2018

Language:

english

File:

PDF, 4.88 MB

english, 2018

6

Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.

Togo, Amadou Hamidou, Diop, Awa, Bittar, Fadi, Maraninchi, Marie, Valero, René, Armstrong, Nicholas, Dubourg, Grégory, Labas, Noémie, Richez, Magali, Delerce, Jeremy, Levasseur, Anthony, Fournier, Pie

Journal:

Antonie van Leeuwenhoek

Year:

2018

Language:

english

File:

PDF, 885 KB

english, 2018

7

A scalable scheme to implement data-driven agriculture for small-scale farmers

Jiménez, Daniel, Delerce, Sylvain, Dorado, Hugo, Cock, James, Muñoz, Luis Armando, Agamez, Alejandro, Jarvis, Andy

Journal:

Global Food Security

Year:

2019

Language:

english

File:

PDF, 1.45 MB

english, 2019

8

Advanced optimization of correlation imaging velocimetry algorithms

A. Fincham, G. Delerce

Journal:

Experiments in Fluids

Year:

2000

Language:

english

File:

PDF, 450 KB

english, 2000

9

Changes in European precipitation seasonality and in drought frequencies revealed by a four-century-long tree-ring isotopic record from Brittany, western France

V. Masson-Delmotte, G. Raffalli-Delerce, P. A. Danis, P. Yiou, M. Stievenard, F. Guibal, O. Mestre, V. Bernard, H. Goosse, G. Hoffmann, J. Jouzel

Journal:

Climate Dynamics

Year:

2005

Language:

english

File:

PDF, 763 KB

english, 2005

10

Reconstruction of summer droughts using tree-ring cellulose isotopes: a calibration study with living oaks from Brittany (western France)

G. RAFFALLI-DELERCE, V. MASSON-DELMOTTE, J. L. DUPOUEY, M. STIEVENARD, N. BREDA, J. M. MOISSELIN

Journal:

Year:

2004

Language:

english

File:

PDF, 586 KB

english, 2004

11

Diagnostic criteria for urinary tract infection in hospitalized elderly patients over 75 years of age: A multicenter cross-sectional study

Gavazzi, G., Delerce, E., Cambau, E., François, P., Corroyer, B., de Wazières, B., Fougère, B., Paccalin, M., Gaillat, J.

Journal:

Médecine et Maladies Infectieuses

Year:

2013

File:

PDF, 397 KB

2013

12

Accueil du polytraumatisé au déchocage des hôpitaux du Léman

Chaillet, E., Peribois, G., Tavernier, D., Delerce, F., Perrillat, F., Coz, J.-M., Slamani, L., Ciocan, I.

Journal:

Journal Européen des Urgences

Year:

2009

Language:

french

File:

PDF, 61 KB

french, 2009

13

Diagnostic criteria for urinary tract infection in hospitalized elderly patients over 75 years of age: A multicenter cross-sectional study

Gavazzi, G., Delerce, E., Cambau, E., Francois, P., Corroyer, B., de Wazières, B., Fougère, B., Paccalin, M., Gaillat, J.

Journal:

European Geriatric Medicine

Year:

2013

Language:

english

File:

PDF, 61 KB

english, 2013

14

Comment respecter totalement un protocole?

Perrillat, F., Buchet, V., Matte, C., Ciocan, I., Peribois, G., Slamani, L., Mer, L., Delerce, F.

Journal:

Journal Européen des Urgences

Year:

2007

Language:

french

File:

PDF, 86 KB

french, 2007

15

Les urgentistes, doivent-ils faire de l'échographie?

Perrillat, F., Matte, C., Ciocan, I., Slamani, L., Peribois, G., Mer, L., Delerce, F., Beghin, M.-A.

Journal:

Journal Européen des Urgences

Year:

2007

Language:

french

File:

PDF, 99 KB

french, 2007

16

Draft genome sequence of Coxiella burnetii Dog Utad, a strain isolated from a dog-related outbreak of Q fever

D’amato, F., Million, M., Edouard, S., Delerce, J., Robert, C., Marrie, T., Raoult, D.

Journal:

New Microbes and New Infections

Year:

2014

Language:

english

File:

PDF, 415 KB

english, 2014

17

Loss of TSS1 in hypervirulent Coxiella burnetii 175, the causative agent of Q fever in French Guiana

D’Amato, Felicetta, Eldin, Carole, Georgiades, Kalliopi, Edouard, Sophie, Delerce, Jeremy, Labas, Noémie, Raoult, Didier

Journal:

Comparative Immunology, Microbiology and Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

18

RSAT 2015: Regulatory Sequence Analysis Tools

Medina-Rivera, Alejandra, Defrance, Matthieu, Sand, Olivier, Herrmann, Carl, Castro-Mondragon, Jaime A., Delerce, Jeremy, Jaeger, Sébastien, Blanchet, Christophe, Vincens, Pierre, Caron, Christophe, S

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 972 KB

english, 2015

19

“Bacillus massilionigeriensis”, a new bacterial species isolated from the human gut microbiota

Tidjani Alou, Maryam, Brah, Souleymane, Delerce, Jeremy, Cadoret, Frédéric, Fournier, Pierre-Edouard, Lagier, Jean-Christophe

Journal:

Human Microbiome Journal

Year:

2016

Language:

english

File:

PDF, 471 KB

english, 2016

20

“Anaerotruncus massiliensis”, A new species identified from human stool from an obese patient after bariatric surgery

Togo, Amadou H., valero, René, Delerce, Jérémy, Raoult, Didier, Million, Matthieu

Journal:

New Microbes and New Infections

Year:

2016

Language:

english

File:

PDF, 1015 KB

english, 2016

21

‘Beduinella massiliensis’, gen. nov., sp. nov. a new genus representing a new family in the phylum Firmicutes, and proposal of Beduinellaceae fam. nov.

Traore, S.I., Azhar, E.I., Yasir, M., Bibi, F., Delerce, J., Fournier, P.-E., Jiman-Fatani, A.A., Lagier, J.-C., Raoult, D.

Journal:

New Microbes and New Infections

Year:

2016

Language:

english

File:

PDF, 561 KB

english, 2016

22

Corynebacterium phoceense sp. nov., strain MC1T a new bacterial species isolated from human urine

Cresci, Marina, Lo, Cheikh Ibrahima, Khelaifia, Saber, Mouelhi, Donia, Delerce, Jérémy, Di Pinto, Fabrizio, Michelle, Caroline, Fournier, Pierre-Edouard, Raoult, Didier, Lagier, Jean-Christophe, Moal,

Journal:

New Microbes and New Infections

Year:

2016

Language:

english

File:

PDF, 2.17 MB

english, 2016

23

Comparison of a Modern and Fossil Pithovirus Reveals Its Genetic Conservation and Evolution

Levasseur, Anthony, Andreani, Julien, Delerce, Jeremy, Bou Khalil, Jacques, Robert, Catherine, La Scola, Bernard, Raoult, Didier

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 561 KB

english, 2016

24

Noncontiguous finished genome sequence and description of Prevotella phocaeensis sp. nov., a new anaerobic species isolated from human gut infected by Clostridium difficile

Afouda, P., Ndongo, S., Khelaifia, S., Labas, N., Cadoret, F., Di Pinto, F., Delerce, J., Raoult, D., Million, M.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 1.20 MB

english, 2017

25

‘ Collinsella phocaeensis ’ sp. nov., ‘ Clostridium merdae ’ sp. nov., ‘ Sutterella massiliensis ’ sp. nov., ‘ Sutturella timonensis ’ sp. nov., ‘ Enorma phocaeensis ’ sp. nov., ‘ Mailhella massiliensis ’ gen. nov., sp. nov., ‘ Mordavella massiliensis ’ gen. nov., sp. nov. and ‘ Massiliprevotella massiliensis ’ gen. nov., sp. nov., 9 new species isolated from fresh stool samples of healthy French patients

Ndongo, S., Cadoret, F., Dubourg, G., Delerce, J., Fournier, P.-E., Raoult, D., Lagier, J.-C.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

26

Genome sequence and description of Anaeromassilibacillus senegalensis gen. nov., sp. nov., isolated from the gut of patient with kwashiorkor

Guilhot, E., Alou, M.T., Lagier, J.-C., Labas, N., Couderc, C., Delerce, J., Diallo, A., Sokhna, C., Fournier, P.-E., Raoult, D., Khelaifia, S.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 1.71 MB

english, 2017

27

Description of ‘Arabia massiliensis’ gen. nov., sp. nov., ‘Gordonibacter massiliensis’ sp. nov., and ‘Bacilliculturomica massiliensis’ gen. nov., sp. nov., isolated from a faecal specimen of a 50-year-old Saudi Bedouin woman

Traore, S.I., Azhar, E.I., Yasir, M., Bibi, F., Fournier, P.-E., Jiman-Fatani, A.A., Delerce, J., Cadoret, F., Lagier, J.-C., Raoult, D.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

28

Description of “ Blautia phocaeensis” sp.nov., and “ Lachnoclostridium edouardi” sp. nov., isolated from healthy fresh stools of Saudii Arabia bedouins by culturomics

Traore, Sory Ibrahima, Azhar, Esam Ibraheem, Yasir, Muhammad, Bibi, Fehmida, Fournier, Pierre-Edouard, Jiman-Fatani, Asif Ahmad, Delerce, Jeremy, Cadoret, Frédéric, Lagier, Jean-Christophe, Raoult, Di

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 536 KB

english, 2017

29

Description of ‘ Beduinibacterium massiliense ’ gen. nov., sp. nov., ‘ Massilimaliae massiliensis ’ gen. nov., sp. nov., ‘ Provencibacterium massiliense ’ gen. nov., sp. nov. and ‘ Oscilibacter massiliensis ’ sp. nov., isolated from a faecal specimen of a 19-year-old healthy Saudi Arabian Bedouin by culturomics

Traore, S.I., Azhar, E.I., Yasir, M., Bibi, F., Fournier, P.-E., Jiman-Fatani, A.A., Delerce, J., Cadoret, F., Lagier, J.-C., Raoult, D.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 863 KB

english, 2017

30

‘Clostridium mediterraneense,’ a new bacterial species isolated from the human gut

Ndongo, S., Cassir, N., Delerce, J., Raoult, D., La Scola, B.

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 385 KB

english, 2017

31

Kocuria massiliensis sp. nov, a new bacterial species isolated from a patient with foot osteomyelitis

Edouard, Sophie, Fournier, Pierre-Edouard, Beye, Mamadou, Gouriet, Frédérique, Dubourg, Gregory, Delerce, Jeremy, Swiader, Laure, Raoult, Didier

Journal:

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

32

“Bacteroides cutis” A new bacterial species isolated from the human skin

Belkacemi, Souad, Cassir, Nadim, Delerce, Jeremy, Cadoret, Frederic, La Scola, Bernard

Journal:

New Microbes and New Infections

Year:

2017

Language:

english

File:

PDF, 599 KB

english, 2017

33

Corynebacterium fournierii sp. nov., isolated from the female genital tract of a patient with bacterial vaginosis

Diop, Khoudia, Nguyen, Thi Tien, Delerce, Jérémy, Armstrong, Nicholas, Raoult, Didier, Bretelle, Florence, Fenollar, Florence

Journal:

Antonie van Leeuwenhoek

Year:

2018

Language:

english

File:

PDF, 408 KB

english, 2018

34

Draft Genome Sequence of “ Nocardia suismassiliense ” Strain S-137 (CSUR P4007)

Fellag, Mustapha, Levasseur, Anthony, Delerce, Jérémy, Bittar, Fadi, Marié, Jean-Lou, Davoust, Bernard, Drancourt, Michel

Journal:

Genome Announcements

Year:

2018

Language:

english

File:

PDF, 125 KB

english, 2018

35

‘Selenomonas massiliensis,’ a new anaerobic bacterial species isolated from human oral microbiota

Belkacemi, S., Cassir, N., Delerce, J., Cadoret, F., La Scola, B.

Journal:

New Microbes and New Infections

Year:

2018

Language:

english

File:

PDF, 413 KB

english, 2018

36

Characterization of a novel Gram-stain-positive anaerobic coccus isolated from the female genital tract: Genome sequence and description of Murdochiella vaginalis sp. nov.

Diop, Khoudia, Diop, Awa, Khelaifia, Saber, Robert, Catherine, Pinto, Fabrizio Di, Delerce, Jérémy, Raoult, Didier, Fournier, Pierre-Edouard, Bretelle, Florence, Fenollar, Florence

Journal:

MicrobiologyOpen

Year:

2018

Language:

english

File:

PDF, 1003 KB

english, 2018

37

“Nigerium massiliense” gen. nov., sp. nov., a new bacterium isolated from the gut from a patient with acute malnutrition

Traore, Sory Ibrahima, Brah, Souleymane, Delerce, Jeremy, Fournier, Pierre Edouard, Raoult, Didier, Edouard, Sophie

Journal:

Human Microbiome Journal

Year:

2016

Language:

english

File:

PDF, 457 KB

english, 2016

38

Assessing Weather-Yield Relationships in Rice at Local Scale Using Data Mining Approaches

Delerce, Sylvain, Dorado, Hugo, Grillon, Alexandre, Rebolledo, Maria Camila, Prager, Steven D., Patiño, Victor Hugo, Garcés Varón, Gabriel, Jiménez, Daniel, Wang, Zonghua

Journal:

Year:

2016

Language:

english

File:

PDF, 2.69 MB

english, 2016

39

Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?

Tidjani Alou, Maryam, Million, Matthieu, Traore, Sory I., Mouelhi, Donia, Khelaifia, Saber, Bachar, Dipankar, Caputo, Aurelia, Delerce, Jeremy, Brah, Souleymane, Alhousseini, Daouda, Sokhna, Cheikh, R

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 2.30 MB

english, 2017

40

Genomic and phenotypic description of the newly isolated human species Collinsella bouchesdurhonensis sp. nov.

Bilen, Melhem, Beye, Mamadou, Mbogning Fonkou, Maxime Descartes, Khelaifia, Saber, Cadoret, Frédéric, Armstrong, Nicholas, Nguyen, Thi Tien, Delerce, Jérémy, Daoud, Ziad, Raoult, Didier, Fournier, Pie

Journal:

MicrobiologyOpen

Year:

2018

Language:

english

File:

PDF, 524 KB

english, 2018

41

Correction to: Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.

Togo, Amadou Hamidou, Diop, Awa, Bittar, Fadi, Maraninchi, Marie, Valero, René, Armstrong, Nicholas, Dubourg, Grégory, Labas, Noémie, Richez, Magali, Delerce, Jeremy, Levasseur, Anthony, Fournier, Pie

Journal:

Antonie van Leeuwenhoek

Year:

2018

Language:

english

File:

PDF, 303 KB

english, 2018

42

Pulmonary Isolation of Multidrug resistant “Mycobacterium simulans” and Mycobacterium tuberculosis from a patient in the Horn of Africa

Bouzid, Fériel, Osman, Djaltou Aboubaker, Baptiste, Emeline, Delerce, Jeremy, Hassan, Mohamed Osman, Arreh, Warsama Ibrahim, Levasseur, Anthony, Garnotel, Eric, Drancourt, Michel

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.73 MB

english, 2018

43

Reconstruction of summer droughts using tree-ring cellulose isotopes: a calibration study with living oaks from Brittany (western France)

Raffalli-Delerce, G., Masson-Delmotte, V., Dupouey, J. L., Stievenard, M., Breda, N., Moisselin, J. M.

Journal:

Year:

2004

Language:

english

File:

PDF, 783 KB

english, 2004

44

Genome sequence and description of Coprococcus phoceensis gen. nov., sp. nov., a new bacterial genus isolated from the human left colon

Bonnet, M., Ricaboni, D., Mailhe, M., Vitton, V., Benezech, A., Delerce, J., Raoult, D., Cassir, N., Lascola, B., Khelaifia, S.

Journal:

New Microbes and New Infections

Year:

2019

Language:

english

File:

PDF, 732 KB

english, 2019

45

Lactimicrobium massiliense gen. nov., sp. nov.; Anaerolactibacter massiliensis gen. nov., sp. nov.; Galactobacillus timonensis gen. nov., sp. nov. and Acidipropionibacterium timonense sp. nov. isolated from breast milk from healthy breastfeeding African women

Togo, A.H., Diop, A., Camara, A., Kuete, E., Konate, S., Brevaut, V., Des Robert, C., Delerce, J., Armstrong, N., Roussel, Y., Fournier, P.-E., Thera, M.A., Raoult, D., Million, M.

Journal:

New Microbes and New Infections

Year:

2019

Language:

english

File:

PDF, 1.90 MB

english, 2019

46

Massilimicrobiota timonensis gen. nov., sp. nov., a new bacterium isolated from the human gut microbiota

Tall, M.L., Ndongo, S., Ngom, I.I., Delerce, J., Khelaifia, S., Raoult, D., Fournier, P.-E., Levasseur, A.

Journal:

New Microbes and New Infections

Year:

2019

Language:

english

File:

PDF, 635 KB

english, 2019

47

A scalable scheme to implement data-driven agriculture for small-scale farmers

Jiménez, Daniel, Delerce, Sylvain, Dorado, Hugo, Cock, James, Muñoz, Luis Armando, Agamez, Alejandro, Jarvis, Andy

Journal:

Global Food Security

Year:

2019

File:

PDF, 1.45 MB

2019

48

Listeria monocytogenes in human milk in Mali: A potential health emergency

Togo, Amadou Hamidou, Dubourg, Gregory, Camara, Aminata, Konate, Salimata, Delerce, Jeremy, Andrieu, Claudia, Djimde, Abdoulaye, Thera, Mahamadou Ali, Million, Matthieu, Raoult, Didier

Journal:

Journal of Infection

Year:

2019

Language:

english

File:

PDF, 502 KB

english, 2019

49

Listeria monocytogenes in human milk in Mali: A potential health emergency

Togo, Amadou Hamidou, Dubourg, Gregory, Camara, Aminata, Konate, Salimata, Delerce, Jeremy, Andrieu, Claudia, Djimde, Abdoulaye, Thera, Mahamadou Ali, Million, Matthieu, Raoult, Didier

Journal:

Journal of Infection

Year:

2019

File:

PDF, 502 KB

2019

50

Isolation of Yasminevirus, the First Member of Klosneuvirinae Isolated in Coculture with Vermamoeba vermiformis , Demonstrates an Extended Arsenal of Translational Apparatus Components

Bajrai, Leena Hussein, Mougari, Saïd, Andreani, Julien, Baptiste, Emeline, Delerce, Jeremy, Raoult, Didier, Azhar, Esam Ibraheem, La Scola, Bernard, Levasseur, Anthony, Shisler, Joanna L.

Journal:

Journal of Virology

Year:

2019

Language:

english

File:

PDF, 7.48 MB

english, 2019

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